| Water Resource Name | Alternate Names | Water Resource Type | County | S-T-R |
|---|---|---|---|---|
| Beacon Lake | Lake | Manatee | 26-34-18 | |
| Boggy Creek | River | Manatee | N/A¹ | |
| Braden River | River | Manatee | N/A¹ | |
| Cedar Creek | River | Manatee | N/A¹ | |
| Cedar Hammock Creek | River | Manatee | N/A¹ | |
| Center Lake | Lake | Manatee | 20-35-18 | |
| Clearwater Lake | Lake | Manatee | 25-34-21 | |
| Colony Lake | Lake | Manatee | 3-34-18 | |
| Cooper Creek | River | Sarasota | N/A¹ | |
| Corbit Branch | River | Manatee | N/A¹ | |
| Craig Branch | River | Manatee | N/A¹ | |
| Crawford Lake | Lake | Manatee | 14-34-19 | |
| Cypress Strand | River | Manatee | N/A¹ | |
| Desoto Honore Northwest Pond | Pond DP3-31 | Lake | Sarasota | 35-27-18 |
| Fisher Branch | River | Manatee | N/A¹ | |
| Fort Crawford Creek | River | Manatee | N/A¹ | |
| Gamble Creek | River | Manatee | N/A¹ | |
| Gap Creek | River | Manatee | N/A¹ | |
| Gates Creek | River | Manatee | N/A¹ | |
| Gilley Creek | River | Manatee | N/A¹ | |
| Glenn Creek | River | Manatee | N/A¹ | |
| Goddard Creek | River | Manatee | N/A¹ | |
| Gum Swamp | Lake | Manatee | 10-35-21 | |
| Harvey Prong | River | Manatee | N/A¹ | |
| Heron Lake | Lake | Manatee | 20-35-19 | |
| Hickory Hammock Creek | River | Manatee | N/A¹ | |
| Honore 59th Northeast Pond | Pond DP3-32 | Lake | Sarasota | 35-27-18 |
| Honore Avenue Pond | Lake | Sarasota | 2-36-18 | |
| Honore Avenue Pond DP3-30 | Lake | Sarasota | 2-36-18 | |
| Horseshoe Lake | Lake | Manatee | 14-34-19 | |
| Lake A | Lake | Manatee | 29-34-19 | |
| Lake B | Lake | Manatee | 29-34-19 | |
| Lake C | Lake | Manatee | 29-34-19 | |
| Lake D | Lake | Manatee | 29-34-19 | |
| Laurel Lake | Lake | Manatee | 3-34-18 | |
| Little Deep Branch | River | Manatee | N/A¹ | |
| Little Fort Crawford Creek | River | Manatee | N/A¹ | |
| Little Sawgrass, Lake | Lake | Manatee | 15-33-19 | |
| Long Lake | Lake | Manatee | 3-34-18 | |
| Lower Manatee River | River | Manatee | N/A¹ | |
| Manatee River - East Fork | River | Manatee | N/A¹ | |
| Manatee River - North Fork | River | Manatee | N/A¹ | |
| Manatee River Estuary | Bay | Manatee | N/A¹ | |
| Manatee, Lake | Lake | Manatee | 29-34-20 | |
| Mclewis Bayou | River | Sarasota | N/A¹ | |
| Mcmullen Creek | River | Manatee | N/A¹ | |
| Mill Creek | River | Manatee | N/A¹ | |
| Montego Bay | Lake | Manatee | 3-34-18 | |
| Nathan Benderson Park Lake | Cooper Creek Lake, Pond L3-24 South | Lake | Sarasota | 35-27-18 |
| Nonsense Creek | River | Manatee | N/A¹ | |
| North Lake | Lake | Manatee | 3-34-18 | |
| Osprey, Lake | Pond P5-2 | Lake | Sarasota | 6-36-19 |
| Parrish, Lake | Lake | Manatee | 9-33-20 | |
| Peacock Branch | River | Manatee | N/A¹ | |
| Pleasant Lake | Lake | Manatee | 11-35-18 | |
| Poley Branch | River | Manatee | N/A¹ | |
| Rattlesnake Slough | River | Manatee | N/A¹ | |
| Rye Branch | River | Manatee | N/A¹ | |
| Sand Branch | River | Manatee | N/A¹ | |
| Sand Prairie | Lake | Manatee | 23-33-19 | |
| Slaughter Drain | River | Manatee | N/A¹ | |
| Sugarhouse Creek | River | Manatee | N/A¹ | |
| Summerfield Lake | Lake | Manatee | 21-35-19 | |
| Sunrise Lake | Lake | Manatee | 2-34-18 | |
| Sunset Lake | Lake | Manatee | 3-34-18 | |
| Terra Ceia Bay | Bay | Manatee | N/A¹ | |
| Tyre Creek | River | Manatee | N/A¹ | |
| Uihlein, Lake | Lake | Manatee | 32-35-19 | |
| Upper Manatee River | River | Manatee | N/A¹ | |
| Ward Lake | Bill Evers Reservoir, Lake Evers | Lake | Manatee | 22-35-18 |
| Wares Creek | River | Manatee | N/A¹ | |
| Warner East Bayou | Lake | Manatee | 20-34-17 | |
| Warner West Bayou | Lake | Manatee | 20-34-17 | |
| Water Hole Creek | River | Manatee | N/A¹ | |
| Webb Branch | River | Manatee | N/A¹ | |
| Williams Creek | River | Manatee | N/A¹ | |
| Wilson Pond | Lake | Manatee | 14-34-19 | |
| Wolf Slough | River | Manatee | N/A¹ |
